STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0842Hypothetical protein. (177 aa)    
Predicted Functional Partners:
glnA
Glutamine synthetase.
       0.802
lspI
Type II secretory pathway protein LspI.
 
     0.613
lspF
Type II secretory pathway protein LspF.
       0.605
lspJ
Type II secretory pathway protein LspJ.
 
     0.601
Ljam_0846
General secretion pathway protein LspH.
 
     0.599
Ljam_0795
ProQ-like, activator of ProP osmoprotectant transporter; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.
  
     0.560
lspG
Type II secretory pathway protein LspG.
       0.548
lspK
Type II secretory pathway protein.
       0.548
Ljam_2242
Transmembrane protein.
  
     0.536
Ljam_0233
Putative phosphate transport regulator.
  
     0.530
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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