Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0846 | Ljam_1903 | Ljam_0846 | Ljam_1903 | General secretion pathway protein LspH. | Hypothetical protein. | 0.518 |
Ljam_0846 | Ljam_2419 | Ljam_0846 | Ljam_2419 | General secretion pathway protein LspH. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.508 |
Ljam_0846 | lspD | Ljam_0846 | Ljam_0573 | General secretion pathway protein LspH. | Type II protein secretion LspD. | 0.781 |
Ljam_0846 | lspE | Ljam_0846 | Ljam_0572 | General secretion pathway protein LspH. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.774 |
Ljam_0846 | lspF | Ljam_0846 | Ljam_0844 | General secretion pathway protein LspH. | Type II secretory pathway protein LspF. | 0.923 |
Ljam_0846 | lspG | Ljam_0846 | Ljam_0845 | General secretion pathway protein LspH. | Type II secretory pathway protein LspG. | 0.918 |
Ljam_0846 | lspI | Ljam_0846 | Ljam_0847 | General secretion pathway protein LspH. | Type II secretory pathway protein LspI. | 0.964 |
Ljam_0846 | lspJ | Ljam_0846 | Ljam_0848 | General secretion pathway protein LspH. | Type II secretory pathway protein LspJ. | 0.996 |
Ljam_0846 | lspK | Ljam_0846 | Ljam_0849 | General secretion pathway protein LspH. | Type II secretory pathway protein. | 0.994 |
Ljam_0846 | pilB | Ljam_0846 | Ljam_2421 | General secretion pathway protein LspH. | Pilus assembly protein PilB. | 0.737 |
Ljam_1903 | Ljam_0846 | Ljam_1903 | Ljam_0846 | Hypothetical protein. | General secretion pathway protein LspH. | 0.518 |
Ljam_1903 | Ljam_2419 | Ljam_1903 | Ljam_2419 | Hypothetical protein. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.501 |
Ljam_1903 | lspD | Ljam_1903 | Ljam_0573 | Hypothetical protein. | Type II protein secretion LspD. | 0.830 |
Ljam_1903 | lspE | Ljam_1903 | Ljam_0572 | Hypothetical protein. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.859 |
Ljam_1903 | lspF | Ljam_1903 | Ljam_0844 | Hypothetical protein. | Type II secretory pathway protein LspF. | 0.836 |
Ljam_1903 | lspG | Ljam_1903 | Ljam_0845 | Hypothetical protein. | Type II secretory pathway protein LspG. | 0.508 |
Ljam_1903 | lspI | Ljam_1903 | Ljam_0847 | Hypothetical protein. | Type II secretory pathway protein LspI. | 0.653 |
Ljam_1903 | lspJ | Ljam_1903 | Ljam_0848 | Hypothetical protein. | Type II secretory pathway protein LspJ. | 0.975 |
Ljam_1903 | lspK | Ljam_1903 | Ljam_0849 | Hypothetical protein. | Type II secretory pathway protein. | 0.958 |
Ljam_1903 | pilB | Ljam_1903 | Ljam_2421 | Hypothetical protein. | Pilus assembly protein PilB. | 0.744 |
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