STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hdaHHistone deacetylase-like amidohydrolase. (306 aa)    
Predicted Functional Partners:
yjeA
Endo-1,4-beta-xylanase-like protein.
    
 0.961
Ljam_1038
SNF2/RAD54 family transporter domain-containing protein.
    
 0.926
hepA
RNA polymerase-associated protein HepA.
    
 0.926
htpG
Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.
    
 0.916
Ljam_2305
SET domain protein.
  
 0.882
Ljam_2530
Eukaryotic huntingtin interacting protein B.
  
 0.882
Ljam_2847
Hypothetical protein.
    
 0.797
pdxB
Erythronate-4-phosphate dehydrogenase; Belongs to the D-isomer specific 2-hydroxyacid dehydrogenase family.
    
 0.759
Ljam_1837
Intracellular protease, ThiJ/PfpI family.
    
  0.718
Ljam_2270
Uridine kinase.
   
  0.700
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.