Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_0900 | comA | Ljam_0900 | Ljam_0901 | Ectonucleoside triphosphate diphosphohydrolase I. | DNA uptake/competence protein ComA. | 0.678 |
| Ljam_2419 | comA | Ljam_2419 | Ljam_0901 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA uptake/competence protein ComA. | 0.762 |
| Ljam_2419 | comEA | Ljam_2419 | Ljam_0972 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Competence protein ComEA. | 0.706 |
| Ljam_2419 | lspE | Ljam_2419 | Ljam_0572 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.892 |
| Ljam_2419 | lspF | Ljam_2419 | Ljam_0844 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Type II secretory pathway protein LspF. | 0.885 |
| Ljam_2419 | pilC | Ljam_2419 | Ljam_2420 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Pilus assembly protein PilC. | 0.976 |
| Ljam_2419 | smf | Ljam_2419 | Ljam_1564 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Protein smf. | 0.787 |
| Ljam_2806 | comA | Ljam_2806 | Ljam_0901 | Ada protein (O6-methylguanine-DNA methyltransferase). | DNA uptake/competence protein ComA. | 0.637 |
| comA | Ljam_0900 | Ljam_0901 | Ljam_0900 | DNA uptake/competence protein ComA. | Ectonucleoside triphosphate diphosphohydrolase I. | 0.678 |
| comA | Ljam_2419 | Ljam_0901 | Ljam_2419 | DNA uptake/competence protein ComA. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.762 |
| comA | Ljam_2806 | Ljam_0901 | Ljam_2806 | DNA uptake/competence protein ComA. | Ada protein (O6-methylguanine-DNA methyltransferase). | 0.637 |
| comA | comEA | Ljam_0901 | Ljam_0972 | DNA uptake/competence protein ComA. | Competence protein ComEA. | 0.639 |
| comA | comF | Ljam_0901 | Ljam_2882 | DNA uptake/competence protein ComA. | Competence protein ComF. | 0.891 |
| comA | lspE | Ljam_0901 | Ljam_0572 | DNA uptake/competence protein ComA. | Type II protein secretion ATPase LspE; Involved in a type II secretion system (T2SS, formerly general secretion pathway, GSP) for the export of proteins. | 0.636 |
| comA | lspF | Ljam_0901 | Ljam_0844 | DNA uptake/competence protein ComA. | Type II secretory pathway protein LspF. | 0.747 |
| comA | pilC | Ljam_0901 | Ljam_2420 | DNA uptake/competence protein ComA. | Pilus assembly protein PilC. | 0.747 |
| comA | rtxA-1 | Ljam_0901 | Ljam_0940 | DNA uptake/competence protein ComA. | Structural toxin protein RtxA. | 0.645 |
| comA | smf | Ljam_0901 | Ljam_1564 | DNA uptake/competence protein ComA. | Protein smf. | 0.903 |
| comEA | Ljam_2419 | Ljam_0972 | Ljam_2419 | Competence protein ComEA. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.706 |
| comEA | comA | Ljam_0972 | Ljam_0901 | Competence protein ComEA. | DNA uptake/competence protein ComA. | 0.639 |
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