Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ljam_0907Rho GTPase (Miro-like). (376 aa)    
Predicted Functional Partners:
Ljam_1996
Ankyrin repeats (3 copies).
  
 
  0.840
Ljam_2209
Ankyrin repeat-containing protein.
  
 
  0.790
smc_3
Chromosome partition protein Smc.
  
     0.765
Ljam_2499
Conserved protein of unknown function [ankyrin repeat].
  
 
  0.763
Ljam_2078
Hypothetical protein.
  
     0.761
Ljam_1181
EPTP domain protein.
  
     0.760
Ljam_1151
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
 
  0.711
apaH
Bis(5'-nucleosyl)-tetraphosphatase; Hydrolyzes diadenosine 5',5'''-P1,P4-tetraphosphate to yield ADP; Belongs to the Ap4A hydrolase family.
   
 0.704
legL1_2
Gala protein type 1, 3 or 4.
  
     0.700
Ljam_2239
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
     0.697
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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