Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
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gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ljam_0916LD-carboxypeptidase. (299 aa)    
Predicted Functional Partners:
ccmH
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
       0.835
ccmG
Cytochrome C biogenesis protein.
       0.835
ccmF
Cytochrome C-type biogenesis protein CcmF.
       0.835
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.835
Ljam_0918
Cytochrome c type biogenesis protein CcmH.
       0.800
Ljam_0917
Acid sphingomyelinase-like phosphodiesterase.
       0.768
dacB
D-alanyl-D-alanine carboxypeptidase.
 
  
 0.731
Ljam_2554
Muramoyltetrapeptide carboxypeptidase.
  
     0.686
ccmC
Heme exporter protein CcmC; Required for the export of heme to the periplasm for the biogenesis of c-type cytochromes; Belongs to the CcmC/CycZ/HelC family.
       0.623
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
     
  0.500
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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