STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_0917Acid sphingomyelinase-like phosphodiesterase. (410 aa)    
Predicted Functional Partners:
Ljam_0918
Cytochrome c type biogenesis protein CcmH.
    
  0.815
Ljam_0073
GGDEF domain-containing sensory box protein.
  
 
 0.786
Ljam_1741
Regulatory protein (GGDEF and EAL domains).
  
 
 0.786
Ljam_1834
Sensor histidine kinase.
  
 
 0.775
Ljam_2058
Serine/threonine protein kinase.
    
 0.775
ccmH
Cytochrome c-type biogenesis protein CcmH; Possible subunit of a heme lyase.
       0.773
ccmG
Cytochrome C biogenesis protein.
       0.773
ccmF
Cytochrome C-type biogenesis protein CcmF.
       0.773
ccmE
Cytochrome c-type biogenesis protein CcmE; Heme chaperone required for the biogenesis of c-type cytochromes. Transiently binds heme delivered by CcmC and transfers the heme to apo-cytochromes in a process facilitated by CcmF and CcmH. Belongs to the CcmE/CycJ family.
       0.773
Ljam_0183
Sensory box histidine kinase/response regulator.
   
 
 0.768
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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