STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1044Opacity protein-like surface antigen. (224 aa)    
Predicted Functional Partners:
Ljam_1045
Opacity protein-like surface antigen.
      
0.857
Ljam_0125
Protein IcmE (DotG).
  
     0.711
Ljam_1048
Soluble lytic murein transglycosylase.
 
     0.682
Ljam_1607
Putative membrane protein YdgA-like protein.
  
     0.656
Ljam_1835
Cysteine protease.
  
     0.650
Ljam_0251
DotA.
  
     0.640
rpe
Ribulose-phosphate 3-epimerase; Belongs to the ribulose-phosphate 3-epimerase family.
       0.638
Ljam_1046
Hypothetical protein.
       0.633
Ljam_0850
Protein-tyrosine phosphatase.
  
     0.621
Ljam_1848
Putative helicase/relaxase.
  
 
   0.581
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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