STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
lly4-hydroxyphenylpyruvate dioxygenase. (355 aa)    
Predicted Functional Partners:
hmgA
Homogentisate 1,2-dioxygenase.
 
 0.991
Ljam_1070
Glutathione S-transferase (maleylacetoacetate isomerase).
 
  
 0.917
Ljam_1069
Fumarylacetoacetate hydrolase.
 
  
 0.909
Ljam_2884
Phenylalanine-4-hydroxylase.
 
  
 0.856
Ljam_1060
Polyketide synthase.
    
 0.825
Ljam_0503
Polyketide synthase.
    
 0.802
Ljam_2843
Acetyl/propionyl-CoA carboxylase, beta subunit.
  
 
 0.788
Ljam_2622
Oxaloacetate decarboxylase subunit alpha.
  
 
  0.712
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.705
hisC-2
Histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
    
 0.680
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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