STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1080Transmembrane protein (fibronectin III domain and Gp5 C-terminal repeat). (358 aa)    
Predicted Functional Partners:
Ljam_1081
NHL repeat protein.
     
0.784
Ljam_1082
Hypothetical protein.
       0.773
Ljam_0485
Von Willebrand factor type A domain protein.
  
     0.701
Ljam_1032
O-Antigen ligase.
  
     0.635
Ljam_2499
Conserved protein of unknown function [ankyrin repeat].
  
     0.598
plaB
Phospholipase.
  
     0.567
Ljam_0408
Chitinase.
  
     0.557
Ljam_0651
Hypothetical protein.
  
     0.545
rssA_2
Esterase of the alpha-beta hydrolase superfamily protein.
  
     0.544
icmP
IcmP protein.
  
     0.502
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.