Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1122Hypothetical protein. (314 aa)    
Predicted Functional Partners:
Ljam_2512
Deoxyribodipyrimidine photolyase; Belongs to the DNA photolyase family.
  
  
 0.945
Ljam_2698
tRNA-specific 2-thiouridylase MnmA.
 
     0.677
Ljam_1121
Hypothetical protein.
       0.536
Ljam_2025
Trehalose-6-phosphate synthase.
   
    0.520
hemH
Ferrochelatase; Catalyzes the ferrous insertion into protoporphyrin IX. Belongs to the ferrochelatase family.
  
  
 0.504
Ljam_1123
Hypothetical protein.
       0.493
Ljam_0778
Cyclopropane fatty acid synthase.
     
 0.487
Ljam_0838
Transcriptional regulator.
     
 0.487
ycgE
HTH-type transcriptional repressor YcgE.
  
    0.482
queF
GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1).
  
    0.482
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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