STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1154Short chain dehydrogenase/reductase family oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family. (239 aa)    
Predicted Functional Partners:
Ljam_0503
Polyketide synthase.
  
 
 0.852
Ljam_1060
Polyketide synthase.
  
 
 0.852
Ljam_2195
3-oxoacyl-ACP reductase.
  
 
  0.688
fabG_1
3-oxoacyl-ACP reductase; Catalyzes the NADPH-dependent reduction of beta-ketoacyl-ACP substrates to beta-hydroxyacyl-ACP products, the first reductive step in the elongation cycle of fatty acid biosynthesis. Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.678
iolG
Myo-inositol-2-dehydrogenase.
  
 
  0.670
Ljam_1201
Short chain dehydrogenase/reductase family transporter protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
  0.660
Ljam_2805
Hypothetical protein.
  
 
 0.646
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
   
 
  0.592
Ljam_2055
Pteridine reductase.
  
 
  0.572
Ljam_1153
Hypothetical protein.
       0.476
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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