STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1185Glutamine amidotransferase. (304 aa)    
Predicted Functional Partners:
Ljam_1184
cNMP binding domain-containing protein.
       0.802
Ljam_0726
Glucoamylase.
  
     0.616
egtD
Histidine-specific methyltransferase EgtD.
  
 
 0.615
Ljam_2329
Methyltransferase.
  
 
  0.569
Ljam_1709
Aminopeptidase.
  
     0.567
Ljam_0449
Hypothetical protein.
  
     0.494
sufS
Selenocysteine lyase, PLP-dependent; Catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine.
  
 
 0.485
Ljam_1183
MFS transporter family transporter protein.
       0.465
Ljam_2493
FAD dependent oxidoreductase.
  
     0.460
Ljam_1842
Hypothetical protein.
  
     0.427
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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