Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_1291 | Ljam_1294 | Ljam_1291 | Ljam_1294 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | ABC transporter ATP binding protein. | 0.870 |
Ljam_1291 | Ljam_1295 | Ljam_1291 | Ljam_1295 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Hypothetical protein. | 0.668 |
Ljam_1291 | glsA | Ljam_1291 | Ljam_1299 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Glutaminase; Belongs to the glutaminase family. | 0.445 |
Ljam_1291 | kdsD | Ljam_1291 | Ljam_1290 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Arabinose 5-phosphate isomerase. | 0.997 |
Ljam_1291 | lptA | Ljam_1291 | Ljam_1293 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Lipopolysaccharide export system protein LptA. | 0.822 |
Ljam_1291 | lptC | Ljam_1291 | Ljam_1292 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Lipopolysaccharide export system protein LptC. | 0.902 |
Ljam_1291 | trpC | Ljam_1291 | Ljam_1298 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.711 |
Ljam_1291 | trpD | Ljam_1291 | Ljam_1297 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.711 |
Ljam_1291 | trpG | Ljam_1291 | Ljam_1296 | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | Anthranilate synthase component II. | 0.711 |
Ljam_1294 | Ljam_1291 | Ljam_1294 | Ljam_1291 | ABC transporter ATP binding protein. | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.870 |
Ljam_1294 | Ljam_1295 | Ljam_1294 | Ljam_1295 | ABC transporter ATP binding protein. | Hypothetical protein. | 0.668 |
Ljam_1294 | glsA | Ljam_1294 | Ljam_1299 | ABC transporter ATP binding protein. | Glutaminase; Belongs to the glutaminase family. | 0.466 |
Ljam_1294 | kdsD | Ljam_1294 | Ljam_1290 | ABC transporter ATP binding protein. | Arabinose 5-phosphate isomerase. | 0.850 |
Ljam_1294 | lptA | Ljam_1294 | Ljam_1293 | ABC transporter ATP binding protein. | Lipopolysaccharide export system protein LptA. | 0.976 |
Ljam_1294 | lptC | Ljam_1294 | Ljam_1292 | ABC transporter ATP binding protein. | Lipopolysaccharide export system protein LptC. | 0.997 |
Ljam_1294 | trpC | Ljam_1294 | Ljam_1298 | ABC transporter ATP binding protein. | Indole-3-glycerol phosphate synthase; Belongs to the TrpC family. | 0.711 |
Ljam_1294 | trpD | Ljam_1294 | Ljam_1297 | ABC transporter ATP binding protein. | Anthranilate phosphoribosyltransferase; Catalyzes the transfer of the phosphoribosyl group of 5- phosphorylribose-1-pyrophosphate (PRPP) to anthranilate to yield N-(5'- phosphoribosyl)-anthranilate (PRA). | 0.711 |
Ljam_1294 | trpG | Ljam_1294 | Ljam_1296 | ABC transporter ATP binding protein. | Anthranilate synthase component II. | 0.711 |
Ljam_1295 | Ljam_1291 | Ljam_1295 | Ljam_1291 | Hypothetical protein. | Hydrolase; Catalyzes the hydrolysis of 3-deoxy-D-manno-octulosonate 8- phosphate (KDO 8-P) to 3-deoxy-D-manno-octulosonate (KDO) and inorganic phosphate; Belongs to the KdsC family. | 0.668 |
Ljam_1295 | Ljam_1294 | Ljam_1295 | Ljam_1294 | Hypothetical protein. | ABC transporter ATP binding protein. | 0.668 |
page 1 of 5