Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0503 | Ljam_0879 | Ljam_0503 | Ljam_0879 | Polyketide synthase. | Leucine carboxyl methyltransferase. | 0.628 |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | Ljam_1320 | Ljam_0503 | Ljam_1320 | Polyketide synthase. | Chloramphenicol acetyltransferase. | 0.531 |
Ljam_0503 | Ljam_1321 | Ljam_0503 | Ljam_1321 | Polyketide synthase. | Leucine carboxyl methyltransferase. | 0.649 |
Ljam_0503 | Ljam_1460 | Ljam_0503 | Ljam_1460 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | purN | Ljam_0503 | Ljam_2745 | Polyketide synthase. | Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.673 |
Ljam_0879 | Ljam_0503 | Ljam_0879 | Ljam_0503 | Leucine carboxyl methyltransferase. | Polyketide synthase. | 0.628 |
Ljam_0879 | Ljam_1060 | Ljam_0879 | Ljam_1060 | Leucine carboxyl methyltransferase. | Polyketide synthase. | 0.641 |
Ljam_0879 | Ljam_1321 | Ljam_0879 | Ljam_1321 | Leucine carboxyl methyltransferase. | Leucine carboxyl methyltransferase. | 0.752 |
Ljam_0879 | Ljam_1460 | Ljam_0879 | Ljam_1460 | Leucine carboxyl methyltransferase. | Polyketide synthase. | 0.504 |
Ljam_0879 | purN | Ljam_0879 | Ljam_2745 | Leucine carboxyl methyltransferase. | Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.497 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | Ljam_0879 | Ljam_1060 | Ljam_0879 | Polyketide synthase. | Leucine carboxyl methyltransferase. | 0.641 |
Ljam_1060 | Ljam_1320 | Ljam_1060 | Ljam_1320 | Polyketide synthase. | Chloramphenicol acetyltransferase. | 0.531 |
Ljam_1060 | Ljam_1321 | Ljam_1060 | Ljam_1321 | Polyketide synthase. | Leucine carboxyl methyltransferase. | 0.643 |
Ljam_1060 | Ljam_1460 | Ljam_1060 | Ljam_1460 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | purN | Ljam_1060 | Ljam_2745 | Polyketide synthase. | Phosphoribosylglycinamide formyltransferase; Catalyzes the transfer of a formyl group from 10- formyltetrahydrofolate to 5-phospho-ribosyl-glycinamide (GAR), producing 5-phospho-ribosyl-N-formylglycinamide (FGAR) and tetrahydrofolate. | 0.673 |
Ljam_1320 | Ljam_0503 | Ljam_1320 | Ljam_0503 | Chloramphenicol acetyltransferase. | Polyketide synthase. | 0.531 |
Ljam_1320 | Ljam_1060 | Ljam_1320 | Ljam_1060 | Chloramphenicol acetyltransferase. | Polyketide synthase. | 0.531 |
Ljam_1320 | Ljam_1321 | Ljam_1320 | Ljam_1321 | Chloramphenicol acetyltransferase. | Leucine carboxyl methyltransferase. | 0.512 |
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