Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
pilEType-IV pilin. (144 aa)    
Predicted Functional Partners:
Ljam_1328
Membrane protein.
       0.866
pilM
Tfp pilus assembly protein, ATPase PilM.
 
   
 0.838
pilO
Tfp pilus assembly protein PilO.
 
  
 0.810
pilN
Tfp pilus assembly protein PilN.
 
  
 0.795
Ljam_1187
Hypothetical protein.
  
  
 0.759
pilA
Type IV pilus assembly protein PilA; Belongs to the N-Me-Phe pilin family.
 
  
 0.742
recO
DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination.
       0.712
era
GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism.
       0.712
Ljam_0611
Tfp type 4 fimbrial pilin related signal peptide protein domain protein.
 
  
 0.706
lidA_1
Dot/Icm system substrate protein LidA.
       0.702
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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