Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_0611 | Ljam_1187 | Ljam_0611 | Ljam_1187 | Tfp type 4 fimbrial pilin related signal peptide protein domain protein. | Hypothetical protein. | 0.531 |
| Ljam_0611 | pilE | Ljam_0611 | Ljam_1329 | Tfp type 4 fimbrial pilin related signal peptide protein domain protein. | Type-IV pilin. | 0.705 |
| Ljam_0611 | pilM | Ljam_0611 | Ljam_1347 | Tfp type 4 fimbrial pilin related signal peptide protein domain protein. | Tfp pilus assembly protein, ATPase PilM. | 0.480 |
| Ljam_0611 | pilN | Ljam_0611 | Ljam_1346 | Tfp type 4 fimbrial pilin related signal peptide protein domain protein. | Tfp pilus assembly protein PilN. | 0.447 |
| Ljam_0611 | pilO | Ljam_0611 | Ljam_1345 | Tfp type 4 fimbrial pilin related signal peptide protein domain protein. | Tfp pilus assembly protein PilO. | 0.495 |
| Ljam_1187 | Ljam_0611 | Ljam_1187 | Ljam_0611 | Hypothetical protein. | Tfp type 4 fimbrial pilin related signal peptide protein domain protein. | 0.531 |
| Ljam_1187 | pilE | Ljam_1187 | Ljam_1329 | Hypothetical protein. | Type-IV pilin. | 0.771 |
| Ljam_1187 | pilO | Ljam_1187 | Ljam_1345 | Hypothetical protein. | Tfp pilus assembly protein PilO. | 0.408 |
| Ljam_1328 | era | Ljam_1328 | Ljam_1327 | Membrane protein. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.562 |
| Ljam_1328 | lidA_1 | Ljam_1328 | Ljam_1330 | Membrane protein. | Dot/Icm system substrate protein LidA. | 0.545 |
| Ljam_1328 | pilE | Ljam_1328 | Ljam_1329 | Membrane protein. | Type-IV pilin. | 0.802 |
| Ljam_1328 | recO | Ljam_1328 | Ljam_1326 | Membrane protein. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.562 |
| era | Ljam_1328 | Ljam_1327 | Ljam_1328 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Membrane protein. | 0.562 |
| era | lidA_1 | Ljam_1327 | Ljam_1330 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Dot/Icm system substrate protein LidA. | 0.414 |
| era | pilE | Ljam_1327 | Ljam_1329 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | Type-IV pilin. | 0.562 |
| era | recO | Ljam_1327 | Ljam_1326 | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.919 |
| lidA_1 | Ljam_1328 | Ljam_1330 | Ljam_1328 | Dot/Icm system substrate protein LidA. | Membrane protein. | 0.545 |
| lidA_1 | era | Ljam_1330 | Ljam_1327 | Dot/Icm system substrate protein LidA. | GTP-binding protein Era; An essential GTPase that binds both GDP and GTP, with rapid nucleotide exchange. Plays a role in 16S rRNA processing and 30S ribosomal subunit biogenesis and possibly also in cell cycle regulation and energy metabolism. | 0.414 |
| lidA_1 | pilE | Ljam_1330 | Ljam_1329 | Dot/Icm system substrate protein LidA. | Type-IV pilin. | 0.546 |
| lidA_1 | recO | Ljam_1330 | Ljam_1326 | Dot/Icm system substrate protein LidA. | DNA repair protein RecO; Involved in DNA repair and RecF pathway recombination. | 0.414 |
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