STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1364Phosphatidylglycerophosphatase B. (216 aa)    
Predicted Functional Partners:
Ljam_0503
Polyketide synthase.
   
 0.891
Ljam_1060
Polyketide synthase.
   
 0.891
Ljam_1365
Melitin resistance protein.
 
    0.864
Ljam_1363
Glycosyl transferase, group 2 family protein.
    
 0.761
Ljam_1362
lipid-A-disaccharide synthase.
 
     0.747
rplF
50S ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.737
Ljam_2100
Cytochrome P450.
    
  0.722
Ljam_2296
Cytochrome P450.
    
  0.722
fadD-1
Long chain fatty acid-CoA ligase.
    
  0.715
Ljam_2478
Sphingosine-1-phosphate lyase I.
    
 0.640
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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