Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1376Hypothetical protein. (339 aa)    
Predicted Functional Partners:
spmB
Spore maturation protein B.
       0.747
Ljam_1375
Spore maturation protein A.
       0.747
Ljam_0251
DotA.
  
     0.732
Ljam_1848
Putative helicase/relaxase.
  
     0.679
Ljam_1835
Cysteine protease.
  
 
  0.646
pepA-2
Aminopeptidase A/I; Presumably involved in the processing and regular turnover of intracellular proteins. Catalyzes the removal of unsubstituted N- terminal amino acids from various peptides.
  
 0.643
Ljam_1717
Hypothetical protein.
  
     0.618
Ljam_0125
Protein IcmE (DotG).
  
     0.614
Ljam_0129
IcmJ protein.
  
     0.606
enhA_4
Enhanced entry protein EnhA.
  
     0.604
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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