Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ljam_1379Tyrosine-specific transport protein. (396 aa)    
Predicted Functional Partners:
Ljam_1378
Outer membrane protein, OmpA family protein.
       0.818
kup
KUP system potassium uptake protein; Transport of potassium into the cell; Belongs to the HAK/KUP transporter (TC 2.A.72) family.
       0.691
Ljam_1380
Tryptophan/tyrosine permease.
 
    
0.662
Ljam_0120
Protein IcmO (DotL).
  
     0.608
Ljam_0129
IcmJ protein.
  
     0.607
dotC
Defect in organelle trafficking lipoprotein DotC.
  
     0.553
Ljam_0123
Protein IcmL (DotI).
  
     0.548
Ljam_0130
Protein IcmB (DotO).
  
     0.538
Ljam_1924
7-dehydrocholesterol reductase.
  
     0.527
Ljam_0251
DotA.
  
 
   0.506
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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