Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_1429 | pagN | Ljam_1429 | Ljam_1431 | Trp repressor binding protein; Belongs to the WrbA family. | Outer membrane protein PagN precursor. | 0.494 |
Ljam_1429 | rbn | Ljam_1429 | Ljam_1432 | Trp repressor binding protein; Belongs to the WrbA family. | Ribonuclease BN. | 0.416 |
Ljam_1429 | yfgD | Ljam_1429 | Ljam_1430 | Trp repressor binding protein; Belongs to the WrbA family. | Oxidoreductase; Belongs to the ArsC family. | 0.821 |
pagN | Ljam_1429 | Ljam_1431 | Ljam_1429 | Outer membrane protein PagN precursor. | Trp repressor binding protein; Belongs to the WrbA family. | 0.494 |
pagN | rbn | Ljam_1431 | Ljam_1432 | Outer membrane protein PagN precursor. | Ribonuclease BN. | 0.477 |
pagN | yfgD | Ljam_1431 | Ljam_1430 | Outer membrane protein PagN precursor. | Oxidoreductase; Belongs to the ArsC family. | 0.494 |
polA | rbn | Ljam_2062 | Ljam_1432 | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | Ribonuclease BN. | 0.432 |
queF | rbn | Ljam_2509 | Ljam_1432 | GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | Ribonuclease BN. | 0.542 |
rbn | Ljam_1429 | Ljam_1432 | Ljam_1429 | Ribonuclease BN. | Trp repressor binding protein; Belongs to the WrbA family. | 0.416 |
rbn | pagN | Ljam_1432 | Ljam_1431 | Ribonuclease BN. | Outer membrane protein PagN precursor. | 0.477 |
rbn | polA | Ljam_1432 | Ljam_2062 | Ribonuclease BN. | DNA polymerase I; In addition to polymerase activity, this DNA polymerase exhibits 5'-3' exonuclease activity; Belongs to the DNA polymerase type-A family. | 0.432 |
rbn | queF | Ljam_1432 | Ljam_2509 | Ribonuclease BN. | GTP cyclohydrolase; Catalyzes the NADPH-dependent reduction of 7-cyano-7- deazaguanine (preQ0) to 7-aminomethyl-7-deazaguanine (preQ1). | 0.542 |
rbn | yfgD | Ljam_1432 | Ljam_1430 | Ribonuclease BN. | Oxidoreductase; Belongs to the ArsC family. | 0.423 |
yfgD | Ljam_1429 | Ljam_1430 | Ljam_1429 | Oxidoreductase; Belongs to the ArsC family. | Trp repressor binding protein; Belongs to the WrbA family. | 0.821 |
yfgD | pagN | Ljam_1430 | Ljam_1431 | Oxidoreductase; Belongs to the ArsC family. | Outer membrane protein PagN precursor. | 0.494 |
yfgD | rbn | Ljam_1430 | Ljam_1432 | Oxidoreductase; Belongs to the ArsC family. | Ribonuclease BN. | 0.423 |