STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1453FMN-dependent dehydrogenase. (360 aa)    
Predicted Functional Partners:
Ljam_1452
4-hydroxyphenylpyruvate dioxygenase.
  
 
  0.850
lysN
2-aminoadipate transaminase.
  
 
 0.801
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
 0.787
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
  
 
 0.770
Ljam_2400
Phosphate acetyl/butaryl transferase; Involved in acetate metabolism. In the N-terminal section; belongs to the CobB/CobQ family.
     
 0.728
prpB
2-methylisocitrate lyase; Catalyzes the thermodynamically favored C-C bond cleavage of (2R,3S)-2-methylisocitrate to yield pyruvate and succinate. Belongs to the isocitrate lyase/PEP mutase superfamily. Methylisocitrate lyase family.
 
 
 
 0.720
Ljam_0380
Hypothetical protein.
  
 0.684
Ljam_0450
Cytokinin oxidase.
  
 0.684
Ljam_2438
L-gulono-gamma-lactone oxidase.
  
 0.664
Ljam_1547
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
     
 0.654
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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