Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1473Integrase; Belongs to the 'phage' integrase family. (399 aa)    
Predicted Functional Partners:
Ljam_1475
Helix-turn-helix protein.
       0.836
Ljam_1474
Hypothetical protein.
       0.807
traC
DNA primase traC.
 
     0.606
trbL
Conjugal transfer protein TrbL.
  
     0.469
traL
traL protein.
  
     0.444
Ljam_0649
Phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.443
traJ
TraJ protein.
  
     0.442
Ljam_0699
Phage integrase; Belongs to the 'phage' integrase family.
 
   
 0.440
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
       0.429
Ljam_0668
lvrA.
 
     0.422
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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