Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Ljam_0675 | Ljam_1484 | Hypothetical protein. | Protein LvrA. | 0.447 |
Ljam_0675 | Ljam_1487 | Hypothetical protein. | Hypothetical protein. | 0.803 |
Ljam_0675 | Ljam_1489 | Hypothetical protein. | Bile acid beta-glucosidase. | 0.782 |
Ljam_0675 | Ljam_1497 | Hypothetical protein. | Hypothetical protein. | 0.782 |
Ljam_0675 | Ljam_1498 | Hypothetical protein. | Exported membrane protein. | 0.782 |
Ljam_0675 | Ljam_1500 | Hypothetical protein. | Type IV secretory protein VirB4 component. | 0.803 |
Ljam_0675 | Ljam_1501 | Hypothetical protein. | TraU protein. | 0.782 |
Ljam_0675 | Ljam_1502 | Hypothetical protein. | Pilus retraction ATPase PilT. | 0.779 |
Ljam_0675 | Ljam_1503 | Hypothetical protein. | Membrane protein. | 0.778 |
Ljam_1484 | Ljam_0675 | Protein LvrA. | Hypothetical protein. | 0.447 |
Ljam_1484 | Ljam_1487 | Protein LvrA. | Hypothetical protein. | 0.902 |
Ljam_1484 | Ljam_1489 | Protein LvrA. | Bile acid beta-glucosidase. | 0.923 |
Ljam_1484 | Ljam_1491 | Protein LvrA. | Hypothetical protein. | 0.909 |
Ljam_1484 | Ljam_1497 | Protein LvrA. | Hypothetical protein. | 0.902 |
Ljam_1484 | Ljam_1498 | Protein LvrA. | Exported membrane protein. | 0.916 |
Ljam_1484 | Ljam_1500 | Protein LvrA. | Type IV secretory protein VirB4 component. | 0.910 |
Ljam_1484 | Ljam_1501 | Protein LvrA. | TraU protein. | 0.918 |
Ljam_1484 | Ljam_1502 | Protein LvrA. | Pilus retraction ATPase PilT. | 0.905 |
Ljam_1484 | Ljam_1503 | Protein LvrA. | Membrane protein. | 0.917 |
Ljam_1487 | Ljam_0675 | Hypothetical protein. | Hypothetical protein. | 0.803 |
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