STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1515Ribose-phosphate pyrophosphokinase; Belongs to the ribose-phosphate pyrophosphokinase family. (301 aa)    
Predicted Functional Partners:
Ljam_1547
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
   
 0.988
Ljam_1514
Thymidine phosphorylase.
 
  
 0.966
odpB
Pyruvate dehydrogenase E1 subunit beta.
   
 0.923
Ljam_1513
Metallo-beta lactamase family transporter protein.
 
     0.879
Ljam_1512
Chemiosmotic efflux system B protein A; Belongs to the resistance-nodulation-cell division (RND) (TC 2.A.6) family.
       0.781
ctpA_1
Cation efflux transporter.
  
    0.757
Ljam_1510
Chemiosmotic efflux system B protein C.
       0.755
cebB
Chemiosmotic efflux system B protein B; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
       0.755
sucA
2-oxoglutarate dehydrogenase E1.
    
 0.736
Ljam_1516
Hypothetical protein.
       0.708
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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