STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
dacBD-alanyl-D-alanine carboxypeptidase. (598 aa)    
Predicted Functional Partners:
Ljam_0916
LD-carboxypeptidase.
 
  
 0.693
dacA
D-alanyl-D-alanine carboxypeptidase (penicillin-binding protein 5); Belongs to the peptidase S11 family.
     
 0.682
parB_1
Chromosome partitioning protein ParB; Belongs to the ParB family.
       0.661
Ljam_0154
Conserved exported protein of unknown function.
 
  
  0.643
Ljam_2065
(serine-type) D-alanyl-D-alanine carboxypeptidase.
     
 0.625
enhA_1
Enhanced entry protein EnhA.
  
  
  0.608
enhA_3
Enhanced entry protein EnhA.
  
  
  0.605
enhA_4
Enhanced entry protein EnhA.
  
  
  0.605
enhA_6
Enhanced entry protein EnhA.
  
  
  0.605
Ljam_2554
Muramoyltetrapeptide carboxypeptidase.
 
  
 0.601
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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