Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0073 | Ljam_1741 | Ljam_0073 | Ljam_1741 | GGDEF domain-containing sensory box protein. | Regulatory protein (GGDEF and EAL domains). | 0.998 |
Ljam_0073 | comA | Ljam_0073 | Ljam_0901 | GGDEF domain-containing sensory box protein. | DNA uptake/competence protein ComA. | 0.517 |
Ljam_0073 | comF | Ljam_0073 | Ljam_2882 | GGDEF domain-containing sensory box protein. | Competence protein ComF. | 0.811 |
Ljam_0073 | fliP | Ljam_0073 | Ljam_0376 | GGDEF domain-containing sensory box protein. | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.951 |
Ljam_0073 | smf | Ljam_0073 | Ljam_1564 | GGDEF domain-containing sensory box protein. | Protein smf. | 0.623 |
Ljam_1565 | smf | Ljam_1565 | Ljam_1564 | Hypothetical protein. | Protein smf. | 0.802 |
Ljam_1565 | topA | Ljam_1565 | Ljam_1566 | Hypothetical protein. | DNA topoisomerase I; Releases the supercoiling and torsional tension of DNA, which is introduced during the DNA replication and transcription, by transiently cleaving and rejoining one strand of the DNA duplex. Introduces a single-strand break via transesterification at a target site in duplex DNA. The scissile phosphodiester is attacked by the catalytic tyrosine of the enzyme, resulting in the formation of a DNA- (5'-phosphotyrosyl)-enzyme intermediate and the expulsion of a 3'-OH DNA strand. The free DNA strand then undergoes passage around the unbroken strand, thus removing DNA supe [...] | 0.728 |
Ljam_1741 | Ljam_0073 | Ljam_1741 | Ljam_0073 | Regulatory protein (GGDEF and EAL domains). | GGDEF domain-containing sensory box protein. | 0.998 |
Ljam_1741 | comA | Ljam_1741 | Ljam_0901 | Regulatory protein (GGDEF and EAL domains). | DNA uptake/competence protein ComA. | 0.517 |
Ljam_1741 | comF | Ljam_1741 | Ljam_2882 | Regulatory protein (GGDEF and EAL domains). | Competence protein ComF. | 0.811 |
Ljam_1741 | fliP | Ljam_1741 | Ljam_0376 | Regulatory protein (GGDEF and EAL domains). | Flagellar biosynthesis protein FliP; Plays a role in the flagellum-specific transport system. Belongs to the FliP/MopC/SpaP family. | 0.951 |
Ljam_1741 | smf | Ljam_1741 | Ljam_1564 | Regulatory protein (GGDEF and EAL domains). | Protein smf. | 0.623 |
Ljam_2419 | comA | Ljam_2419 | Ljam_0901 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | DNA uptake/competence protein ComA. | 0.762 |
Ljam_2419 | smf | Ljam_2419 | Ljam_1564 | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | Protein smf. | 0.787 |
comA | Ljam_0073 | Ljam_0901 | Ljam_0073 | DNA uptake/competence protein ComA. | GGDEF domain-containing sensory box protein. | 0.517 |
comA | Ljam_1741 | Ljam_0901 | Ljam_1741 | DNA uptake/competence protein ComA. | Regulatory protein (GGDEF and EAL domains). | 0.517 |
comA | Ljam_2419 | Ljam_0901 | Ljam_2419 | DNA uptake/competence protein ComA. | Type 4 (IV) prepilin-like protein leader peptide processing enzyme PilD; Cleaves type-4 fimbrial leader sequence and methylates the N- terminal (generally Phe) residue. | 0.762 |
comA | comF | Ljam_0901 | Ljam_2882 | DNA uptake/competence protein ComA. | Competence protein ComF. | 0.891 |
comA | recA | Ljam_0901 | Ljam_0392 | DNA uptake/competence protein ComA. | Recombinase A; Can catalyze the hydrolysis of ATP in the presence of single- stranded DNA, the ATP-dependent uptake of single-stranded DNA by duplex DNA, and the ATP-dependent hybridization of homologous single-stranded DNAs. It interacts with LexA causing its activation and leading to its autocatalytic cleavage; Belongs to the RecA family. | 0.589 |
comA | smf | Ljam_0901 | Ljam_1564 | DNA uptake/competence protein ComA. | Protein smf. | 0.903 |
page 1 of 3