STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ljam_1593Poly-beta-hydroxybutyrate polymerase. (614 aa)    
Predicted Functional Partners:
phaB2
Acetyoacetyl CoA reductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
  
  0.938
Ljam_1597
Acetyoacetyl CoA reductase.
  
  
  0.937
phaB_1
Acetoacetyl CoA reductase.
  
  
  0.896
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
     
 0.856
pta_2
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
 
 0.805
pta_1
Bifunctional enoyl-CoA hydratase/phosphate acetyltransferase.
 
 0.800
Ljam_1595
Putative Polyhydroxyalkanoate synthesis repressor PhaR.
 
   
 0.775
Ljam_0714
Esterase.
  
     0.640
phbC_2
Polyhydroxyalkanoic synthase.
  
  
 
0.583
phbC_1
Polyhydroxyalkanoic synthase.
  
  
 
0.577
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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