Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_1622 | Ljam_1623 | Ljam_1622 | Ljam_1623 | Succinate dehydrogenase cytochrome b556 subunit C. | Signal transduction protein. | 0.408 |
Ljam_1622 | Ljam_1624 | Ljam_1622 | Ljam_1624 | Succinate dehydrogenase cytochrome b556 subunit C. | RDD family protein. | 0.424 |
Ljam_1622 | sdhA_2 | Ljam_1622 | Ljam_1620 | Succinate dehydrogenase cytochrome b556 subunit C. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.999 |
Ljam_1622 | sdhB | Ljam_1622 | Ljam_1619 | Succinate dehydrogenase cytochrome b556 subunit C. | Succinate dehydrogenase iron-sulfur subunit. | 0.999 |
Ljam_1622 | sdhD | Ljam_1622 | Ljam_1621 | Succinate dehydrogenase cytochrome b556 subunit C. | Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.999 |
Ljam_1623 | Ljam_1622 | Ljam_1623 | Ljam_1622 | Signal transduction protein. | Succinate dehydrogenase cytochrome b556 subunit C. | 0.408 |
Ljam_1623 | Ljam_1624 | Ljam_1623 | Ljam_1624 | Signal transduction protein. | RDD family protein. | 0.802 |
Ljam_1623 | sdhA_2 | Ljam_1623 | Ljam_1620 | Signal transduction protein. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.404 |
Ljam_1623 | sdhB | Ljam_1623 | Ljam_1619 | Signal transduction protein. | Succinate dehydrogenase iron-sulfur subunit. | 0.407 |
Ljam_1623 | sdhD | Ljam_1623 | Ljam_1621 | Signal transduction protein. | Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.408 |
Ljam_1624 | Ljam_1622 | Ljam_1624 | Ljam_1622 | RDD family protein. | Succinate dehydrogenase cytochrome b556 subunit C. | 0.424 |
Ljam_1624 | Ljam_1623 | Ljam_1624 | Ljam_1623 | RDD family protein. | Signal transduction protein. | 0.802 |
Ljam_1624 | pilP | Ljam_1624 | Ljam_1344 | RDD family protein. | Tfp pilus assembly protein PilP. | 0.406 |
Ljam_1624 | sdhA_2 | Ljam_1624 | Ljam_1620 | RDD family protein. | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | 0.424 |
Ljam_1624 | sdhB | Ljam_1624 | Ljam_1619 | RDD family protein. | Succinate dehydrogenase iron-sulfur subunit. | 0.418 |
Ljam_1624 | sdhD | Ljam_1624 | Ljam_1621 | RDD family protein. | Succinate dehydrogenase, hydrophobic membrane anchor protein; Membrane-anchoring subunit of succinate dehydrogenase (SDH). | 0.424 |
pilP | Ljam_1624 | Ljam_1344 | Ljam_1624 | Tfp pilus assembly protein PilP. | RDD family protein. | 0.406 |
sdhA_2 | Ljam_1622 | Ljam_1620 | Ljam_1622 | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | Succinate dehydrogenase cytochrome b556 subunit C. | 0.999 |
sdhA_2 | Ljam_1623 | Ljam_1620 | Ljam_1623 | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | Signal transduction protein. | 0.404 |
sdhA_2 | Ljam_1624 | Ljam_1620 | Ljam_1624 | Succinate dehydrogenase flavoprotein subunit; Belongs to the FAD-dependent oxidoreductase 2 family. FRD/SDH subfamily. | RDD family protein. | 0.424 |
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