STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1640Ankyrin repeats (3 copies). (2073 aa)    
Predicted Functional Partners:
scpA
Segregation and condensation protein A; Participates in chromosomal partition during cell division. May act via the formation of a condensin-like complex containing Smc and ScpB that pull DNA away from mid-cell into both cell halves.
  
 
 0.841
Ljam_1638
Interaptin.
    
 0.816
smc_3
Chromosome partition protein Smc.
       0.773
Ljam_0772
Chemotaxis histidine kinase.
   
 0.765
Ljam_1642
Inner membrane protein.
    
  0.757
Ljam_0773
Chemotaxis signal transducer.
   
  0.755
Ljam_0183
Sensory box histidine kinase/response regulator.
   
  0.750
Ljam_0431
Sensory box histidine kinase/response regulator.
   
  0.750
Ljam_1150
Sensory box histidine kinase/response regulator.
   
  0.750
Ljam_1227
Sensory box histidine kinase/response regulator.
   
  0.750
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.