Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
Ljam_1658RND efflux membrane fusion protein. (329 aa)    
Predicted Functional Partners:
Ljam_1659
Outer membrane component of multidrug efflux pump.
 
  0.991
Ljam_1657
Toxin secretion ABC transporter HlyB/MsbA family transporter ATP-binding protein.
  0.983
Ljam_1656
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
       0.864
Ljam_1653
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.776
Ljam_1655
NADH-ubiquinone oxidoreductase chain 5.
 
     0.770
Ljam_1972
Outer membrane efflux protein.
  
  0.759
Ljam_1654
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.750
Ljam_2865
Outer membrane protein TolC.
   
  0.735
Ljam_1652
Hypothetical protein.
 
     0.701
Ljam_2753
Hemolysin D; Belongs to the membrane fusion protein (MFP) (TC 8.A.1) family.
  
  
  0.615
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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