STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1659Outer membrane component of multidrug efflux pump. (471 aa)    
Predicted Functional Partners:
Ljam_1658
RND efflux membrane fusion protein.
 
  0.976
Ljam_1657
Toxin secretion ABC transporter HlyB/MsbA family transporter ATP-binding protein.
 
 
  0.962
Ljam_1656
LysR family transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
 
    0.833
Ljam_1654
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.791
Ljam_1653
Hypothetical protein; Belongs to the UPF0753 family.
 
     0.677
Ljam_1655
NADH-ubiquinone oxidoreductase chain 5.
 
     0.668
Ljam_1503
Membrane protein.
  
     0.667
Ljam_1652
Hypothetical protein.
 
     0.659
Ljam_1501
TraU protein.
  
     0.637
Ljam_0687
Membrane protein.
  
     0.636
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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