Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
frgAFrgA protein. (578 aa)    
Predicted Functional Partners:
Ljam_1692
Phosphatidylglycerophosphate synthase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.839
hda
ATPase regulatory factor involved in DnaA inactivation; Belongs to the DnaA family. HdA subfamily.
       0.839
Ljam_0710
Aminoglycoside 6'-N-acetyltransferase.
  
 
 0.810
Ljam_0503
Polyketide synthase.
  
 
 0.632
Ljam_1060
Polyketide synthase.
  
 
 0.632
lysAC_2
Diaminopimelate decarboxylase, aspartate kinase (fusion of lysA and lysC); Belongs to the Orn/Lys/Arg decarboxylase class-II family.
  
 
 0.572
Ljam_1304
Ornithine cyclodeaminase.
  
 
 0.553
Ljam_1690
Hypothetical protein.
       0.525
Ljam_1560
Hypothetical protein.
  
     0.524
Ljam_0645
Hypothetical protein.
  
     0.517
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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