Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_0195 | Ljam_1205 | Ljam_0195 | Ljam_1205 | Low affinity iron permease. | ATP-dependent DNA ligase. | 0.635 |
| Ljam_0195 | ykoV | Ljam_0195 | Ljam_1747 | Low affinity iron permease. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.508 |
| Ljam_0491 | Ljam_0754 | Ljam_0491 | Ljam_0754 | Eukaryotic DNA topoisomerase I, catalytic core. | ATP dependent DNA ligase. | 0.592 |
| Ljam_0491 | Ljam_1205 | Ljam_0491 | Ljam_1205 | Eukaryotic DNA topoisomerase I, catalytic core. | ATP-dependent DNA ligase. | 0.783 |
| Ljam_0491 | phaB_2 | Ljam_0491 | Ljam_1749 | Eukaryotic DNA topoisomerase I, catalytic core. | Acetyoacetyl CoA reductase. | 0.431 |
| Ljam_0491 | ykoV | Ljam_0491 | Ljam_1747 | Eukaryotic DNA topoisomerase I, catalytic core. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.671 |
| Ljam_0754 | Ljam_0491 | Ljam_0754 | Ljam_0491 | ATP dependent DNA ligase. | Eukaryotic DNA topoisomerase I, catalytic core. | 0.592 |
| Ljam_0754 | Ljam_1205 | Ljam_0754 | Ljam_1205 | ATP dependent DNA ligase. | ATP-dependent DNA ligase. | 0.797 |
| Ljam_0754 | ykoV | Ljam_0754 | Ljam_1747 | ATP dependent DNA ligase. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.503 |
| Ljam_1205 | Ljam_0195 | Ljam_1205 | Ljam_0195 | ATP-dependent DNA ligase. | Low affinity iron permease. | 0.635 |
| Ljam_1205 | Ljam_0491 | Ljam_1205 | Ljam_0491 | ATP-dependent DNA ligase. | Eukaryotic DNA topoisomerase I, catalytic core. | 0.783 |
| Ljam_1205 | Ljam_0754 | Ljam_1205 | Ljam_0754 | ATP-dependent DNA ligase. | ATP dependent DNA ligase. | 0.797 |
| Ljam_1205 | ykoV | Ljam_1205 | Ljam_1747 | ATP-dependent DNA ligase. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.952 |
| Ljam_1748 | phaB_2 | Ljam_1748 | Ljam_1749 | Hypothetical protein. | Acetyoacetyl CoA reductase. | 0.741 |
| Ljam_1748 | ykoV | Ljam_1748 | Ljam_1747 | Hypothetical protein. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.515 |
| Ljam_1752 | ykoV | Ljam_1752 | Ljam_1747 | Hypothetical protein. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.409 |
| phaB_2 | Ljam_0491 | Ljam_1749 | Ljam_0491 | Acetyoacetyl CoA reductase. | Eukaryotic DNA topoisomerase I, catalytic core. | 0.431 |
| phaB_2 | Ljam_1748 | Ljam_1749 | Ljam_1748 | Acetyoacetyl CoA reductase. | Hypothetical protein. | 0.741 |
| phaB_2 | ykoV | Ljam_1749 | Ljam_1747 | Acetyoacetyl CoA reductase. | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | 0.666 |
| ykoV | Ljam_0195 | Ljam_1747 | Ljam_0195 | Putative DNA repair protein YkoV; With LigD forms a non-homologous end joining (NHEJ) DNA repair enzyme, which repairs dsDNA breaks with reduced fidelity. Binds linear dsDNA with 5'- and 3'- overhangs but not closed circular dsDNA nor ssDNA. Recruits and stimulates the ligase activity of LigD. Belongs to the prokaryotic Ku family. | Low affinity iron permease. | 0.508 |
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