Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Co-expression
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[Homology]
Score
Ljam_1773Hypothetical protein. (312 aa)    
Predicted Functional Partners:
Ljam_0125
Protein IcmE (DotG).
    
   0.867
lphA
LphA (DotK).
    
   0.787
Ljam_0124
IcmK protein.
    
   0.787
dotF
Component of the Dot/Icm secretion system.
    
   0.787
dotD
Lipoprotein DotD.
    
   0.787
dotC
Defect in organelle trafficking lipoprotein DotC.
    
   0.787
Ljam_0954
Neurogenic locus notch like protein precursor.
    
   0.787
Ljam_1378
Outer membrane protein, OmpA family protein.
    
   0.787
Ljam_1774
Ribonuclease, T2 family; Belongs to the RNase T2 family.
       0.753
pal
Peptidoglycan-associated lipoprotein precursor (19 kDa surface antigen) (PPL); Part of the Tol-Pal system, which plays a role in outer membrane invagination during cell division and is important for maintaining outer membrane integrity.
    
   0.421
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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