Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ljam_1783KQDN repeat-containing protein. (559 aa)    
Predicted Functional Partners:
Ljam_1788
Hypothetical protein.
 
  
 0.980
Ljam_1785
Hypothetical protein.
 
 
 0.978
Ljam_1786
Hypothetical protein.
 
   
 0.971
Ljam_1787
Hypothetical protein.
 
   
 0.968
Ljam_1784
TPR repeat containing protein.
 
 
 0.966
moxR
Methanol dehydrogenase regulatory protein.
 
    0.956
ribA
Riboflavin biosynthesis protein RibA; Catalyzes the conversion of D-ribulose 5-phosphate to formate and 3,4-dihydroxy-2-butanone 4-phosphate; In the C-terminal section; belongs to the GTP cyclohydrolase II family.
    
  0.519
Ljam_0059
Hypothetical protein.
  
     0.496
Ljam_0232
Type II/III secretion system protein.
 
 
 0.482
Ljam_1791
Two component sensor and regulator histidine kinase response regulator.
    
  0.479
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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