Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1785Hypothetical protein. (309 aa)    
Predicted Functional Partners:
Ljam_1784
TPR repeat containing protein.
     0.994
Ljam_1783
KQDN repeat-containing protein.
 
 
 0.978
Ljam_1788
Hypothetical protein.
 
    0.977
Ljam_1786
Hypothetical protein.
   
0.970
Ljam_1787
Hypothetical protein.
 
     0.968
moxR
Methanol dehydrogenase regulatory protein.
 
     0.966
arp_1
Ankyrin repeat protein.
   
  0.696
Ljam_0775
Methyltransferase involved in chemotaxis (CheR domain).
   
 0.618
Ljam_0183
Sensory box histidine kinase/response regulator.
    
 0.615
Ljam_0431
Sensory box histidine kinase/response regulator.
    
 0.615
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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