Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0503 | Ljam_0952 | Ljam_0503 | Ljam_0952 | Polyketide synthase. | Tetratricopeptide repeat protein. | 0.401 |
Ljam_0503 | Ljam_1060 | Ljam_0503 | Ljam_1060 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_0503 | Ljam_1248 | Ljam_0503 | Ljam_1248 | Polyketide synthase. | Prolyl oligopeptidase. | 0.475 |
Ljam_0503 | Ljam_1813 | Ljam_0503 | Ljam_1813 | Polyketide synthase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.953 |
Ljam_0503 | Ljam_1815 | Ljam_0503 | Ljam_1815 | Polyketide synthase. | Acetyltransferase (GNAT) family protein. | 0.572 |
Ljam_0503 | argD | Ljam_0503 | Ljam_1814 | Polyketide synthase. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.565 |
Ljam_0503 | grpB | Ljam_0503 | Ljam_2453 | Polyketide synthase. | Glutamate rich protein GrpB. | 0.890 |
Ljam_0503 | ybaL | Ljam_0503 | Ljam_1816 | Polyketide synthase. | Monovalent cation:proton antiporter (CPA2 family); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.504 |
Ljam_0952 | Ljam_0503 | Ljam_0952 | Ljam_0503 | Tetratricopeptide repeat protein. | Polyketide synthase. | 0.401 |
Ljam_0952 | Ljam_1248 | Ljam_0952 | Ljam_1248 | Tetratricopeptide repeat protein. | Prolyl oligopeptidase. | 0.405 |
Ljam_0952 | Ljam_1815 | Ljam_0952 | Ljam_1815 | Tetratricopeptide repeat protein. | Acetyltransferase (GNAT) family protein. | 0.545 |
Ljam_1060 | Ljam_0503 | Ljam_1060 | Ljam_0503 | Polyketide synthase. | Polyketide synthase. | 0.999 |
Ljam_1060 | Ljam_1248 | Ljam_1060 | Ljam_1248 | Polyketide synthase. | Prolyl oligopeptidase. | 0.471 |
Ljam_1060 | Ljam_1813 | Ljam_1060 | Ljam_1813 | Polyketide synthase. | Superoxide dismutase; Destroys radicals which are normally produced within the cells and which are toxic to biological systems. Belongs to the iron/manganese superoxide dismutase family. | 0.953 |
Ljam_1060 | Ljam_1815 | Ljam_1060 | Ljam_1815 | Polyketide synthase. | Acetyltransferase (GNAT) family protein. | 0.560 |
Ljam_1060 | argD | Ljam_1060 | Ljam_1814 | Polyketide synthase. | Acetylornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. ArgD subfamily. | 0.565 |
Ljam_1060 | grpB | Ljam_1060 | Ljam_2453 | Polyketide synthase. | Glutamate rich protein GrpB. | 0.887 |
Ljam_1060 | ybaL | Ljam_1060 | Ljam_1816 | Polyketide synthase. | Monovalent cation:proton antiporter (CPA2 family); Belongs to the monovalent cation:proton antiporter 2 (CPA2) transporter (TC 2.A.37) family. | 0.504 |
Ljam_1248 | Ljam_0503 | Ljam_1248 | Ljam_0503 | Prolyl oligopeptidase. | Polyketide synthase. | 0.475 |
Ljam_1248 | Ljam_0952 | Ljam_1248 | Ljam_0952 | Prolyl oligopeptidase. | Tetratricopeptide repeat protein. | 0.405 |
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