Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
Ljam_1879ABC transporter. (698 aa)    
Predicted Functional Partners:
Ljam_1880
Hemolysin D.
 
 0.990
Ljam_1882
Hypothetical protein.
 
     0.791
Ljam_2336
Hemolysin D.
 
  0.743
lssD
Secretion system protein D.
  
 0.707
Ljam_1881
Hypothetical protein.
       0.695
Ljam_2865
Outer membrane protein TolC.
  
 
 0.625
Ljam_2251
Multidrug resistance ABC transporter ATP-binding protein.
  
 
 
0.543
abcT
ABC transporter ATP-binding protein.
  
 
 
0.517
Ljam_0418
ABC transporter, ATP binding/permease protein MsbA.
  
 
 
0.513
msbA
ABC transporter, ATP binding/permease protein MsbA; Involved in lipid A export and possibly also in glycerophospholipid export and for biogenesis of the outer membrane. Transmembrane domains (TMD) form a pore in the inner membrane and the ATP-binding domain (NBD) is responsible for energy generation.
  
 
 
0.512
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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