STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_1886Regulator of chromosome condensation (RCC1) repeat protein. (446 aa)    
Predicted Functional Partners:
nuoM
NADH-quinone oxidoreductase chain M.
    
 
 0.909
Ljam_2740
Serine metalloprotease; Belongs to the peptidase S8 family.
   
 0.873
Ljam_1885
Protein kinase domain protein.
 
     0.717
yjeA
Endo-1,4-beta-xylanase-like protein.
    
  0.685
Ljam_2829
Rho GTPase (Miro-like).
  
 
  0.679
Ljam_1127
Ras family GTPase.
  
     0.672
Ljam_1202
Rho GTPase (Miro-like).
  
 
  0.665
Ljam_2386
Thiazole biosynthesis adenylyltransferase ThiF.
  
 
 0.560
Ljam_1200
Cytosolic IMP-GMP specific 5'-nucleotidase.
  
 
 0.517
Ljam_1924
7-dehydrocholesterol reductase.
  
  
 0.469
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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