STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_19247-dehydrocholesterol reductase. (430 aa)    
Predicted Functional Partners:
Ljam_2515
Serine carboxypeptidase.
  
     0.747
Ljam_1923
Hypothetical protein.
       0.737
Ljam_2340
Protein phosphatase 2C.
  
     0.733
legL1_2
Gala protein type 1, 3 or 4.
  
     0.730
legL1_1
Gala protein type 1, 3 or 4.
  
     0.727
Ljam_2438
L-gulono-gamma-lactone oxidase.
 
  
  0.727
Ljam_1202
Rho GTPase (Miro-like).
  
 
  0.648
Ljam_2829
Rho GTPase (Miro-like).
  
 
  0.640
Ljam_2499
Conserved protein of unknown function [ankyrin repeat].
  
 
   0.603
Ljam_1127
Ras family GTPase.
  
     0.587
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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