Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
wrbAFlavoprotein WrbA (Trp repressor binding protein). (199 aa)    
Predicted Functional Partners:
Ljam_1932
Pirin-like protein; Belongs to the pirin family.
       0.857
Ljam_1429
Trp repressor binding protein; Belongs to the WrbA family.
  
  
 
0.855
ubiE
Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2).
     
  0.834
Ljam_2025
Trehalose-6-phosphate synthase.
   
    0.721
Ljam_0196
DNA-binding protein; Belongs to the Dps family.
   
  
 0.636
Ljam_1703
Serine protein kinase.
   
    0.589
Ljam_1931
Dot/Icm secretion system substrate.
       0.585
Ljam_2538
Isochorismatase family protein.
   
    0.511
Ljam_1751
Osmotically inducible protein Y.
   
    0.500
Ljam_2231
Osmotically inducible protein Y.
   
    0.500
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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