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Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ljam_1940Transmembrane protein. (184 aa)    
Predicted Functional Partners:
Ljam_1941
N-acetyl-beta-glucosaminidase.
       0.706
Ljam_2303
Hydrolase/acyltransferase.
  
     0.587
Ljam_1949
Palmitoyl transferase for Lipid A; Transfers a palmitate residue from the sn-1 position of a phospholipid to the N-linked hydroxymyristate on the proximal unit of lipid A or its precursors.
       0.459
Ljam_1942
Hypothetical protein.
       0.442
Ljam_1950
Amino acid transporter PotE.
       0.439
Ljam_1939
Hypothetical protein.
       0.425
Ljam_0581
Inner membrane protein AmpE.
  
     0.418
Ljam_0726
Glucoamylase.
  
     0.418
Ljam_1938
Hypothetical protein.
       0.417
hbp
Hemin binding protein.
       0.404
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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