Export your current network:
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of proteins in your network
Browse interactions in tabular form:
| node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
| Ljam_1303 | tatA | Ljam_1303 | Ljam_1998 | AraC family transcriptional regulator. | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.848 |
| Ljam_1303 | tatB | Ljam_1303 | Ljam_1997 | AraC family transcriptional regulator. | TatB protein (twin arginine translocation). | 0.848 |
| Ljam_2000 | tatA | Ljam_2000 | Ljam_1998 | SCP-2 sterol transfer family protein. | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.808 |
| Ljam_2000 | tatB | Ljam_2000 | Ljam_1997 | SCP-2 sterol transfer family protein. | TatB protein (twin arginine translocation). | 0.808 |
| Ljam_2000 | ubiB | Ljam_2000 | Ljam_1999 | SCP-2 sterol transfer family protein. | Ubiquinone biosynthesis AarF; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.822 |
| Ljam_2000 | ubiE | Ljam_2000 | Ljam_2001 | SCP-2 sterol transfer family protein. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.859 |
| Ljam_2000 | ycaD | Ljam_2000 | Ljam_2002 | SCP-2 sterol transfer family protein. | Putative MFS-type transporter YcaD. | 0.559 |
| guaA | tatA | Ljam_2310 | Ljam_1998 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.939 |
| guaA | tatB | Ljam_2310 | Ljam_1997 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | TatB protein (twin arginine translocation). | 0.939 |
| guaA | yajC | Ljam_2310 | Ljam_1194 | GMP synthase; Catalyzes the synthesis of GMP from XMP. | SecYEG protein translocase auxillary subunit; The SecYEG-SecDF-YajC-YidC holo-translocon (HTL) protein secretase/insertase is a supercomplex required for protein secretion, insertion of proteins into membranes, and assembly of membrane protein complexes. While the SecYEG complex is essential for assembly of a number of proteins and complexes, the SecDF-YajC-YidC subcomplex facilitates these functions. | 0.513 |
| hisI | tatA | Ljam_1091 | Ljam_1998 | Histidine biosynthesis bifunctional protein hisIE (Phosphoribosyl-AMP cyclohydrolase/Phosphoribosyl-ATP pyrophosphatase); In the N-terminal section; belongs to the PRA-CH family. | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.536 |
| hisI | tatB | Ljam_1091 | Ljam_1997 | Histidine biosynthesis bifunctional protein hisIE (Phosphoribosyl-AMP cyclohydrolase/Phosphoribosyl-ATP pyrophosphatase); In the N-terminal section; belongs to the PRA-CH family. | TatB protein (twin arginine translocation). | 0.536 |
| tatA | Ljam_1303 | Ljam_1998 | Ljam_1303 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | AraC family transcriptional regulator. | 0.848 |
| tatA | Ljam_2000 | Ljam_1998 | Ljam_2000 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | SCP-2 sterol transfer family protein. | 0.808 |
| tatA | guaA | Ljam_1998 | Ljam_2310 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | GMP synthase; Catalyzes the synthesis of GMP from XMP. | 0.939 |
| tatA | hisI | Ljam_1998 | Ljam_1091 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Histidine biosynthesis bifunctional protein hisIE (Phosphoribosyl-AMP cyclohydrolase/Phosphoribosyl-ATP pyrophosphatase); In the N-terminal section; belongs to the PRA-CH family. | 0.536 |
| tatA | tatB | Ljam_1998 | Ljam_1997 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | TatB protein (twin arginine translocation). | 0.802 |
| tatA | tatC | Ljam_1998 | Ljam_1851 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Sec-independent protein translocase TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides. | 0.988 |
| tatA | ubiB | Ljam_1998 | Ljam_1999 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Ubiquinone biosynthesis AarF; Is probably a protein kinase regulator of UbiI activity which is involved in aerobic coenzyme Q (ubiquinone) biosynthesis. | 0.822 |
| tatA | ubiE | Ljam_1998 | Ljam_2001 | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | Ubiquinone/menaquinone biosynthesis methyltransferase; Methyltransferase required for the conversion of demethylmenaquinol (DMKH2) to menaquinol (MKH2) and the conversion of 2-polyprenyl-6-methoxy-1,4-benzoquinol (DDMQH2) to 2-polyprenyl-3- methyl-6-methoxy-1,4-benzoquinol (DMQH2). | 0.837 |
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