Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_0105 | Ljam_1966 | Ljam_0105 | Ljam_1966 | Membrane fusogenic activity. | Hypothetical protein; Belongs to the UPF0149 family. | 0.567 |
Ljam_0105 | Ljam_2000 | Ljam_0105 | Ljam_2000 | Membrane fusogenic activity. | SCP-2 sterol transfer family protein. | 0.686 |
Ljam_0105 | mreD | Ljam_0105 | Ljam_0968 | Membrane fusogenic activity. | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | 0.458 |
Ljam_0638 | Ljam_1895 | Ljam_0638 | Ljam_1895 | Membrane protein. | Lipoprotein. | 0.628 |
Ljam_0638 | Ljam_2000 | Ljam_0638 | Ljam_2000 | Membrane protein. | SCP-2 sterol transfer family protein. | 0.562 |
Ljam_1895 | Ljam_0638 | Ljam_1895 | Ljam_0638 | Lipoprotein. | Membrane protein. | 0.628 |
Ljam_1895 | Ljam_2000 | Ljam_1895 | Ljam_2000 | Lipoprotein. | SCP-2 sterol transfer family protein. | 0.719 |
Ljam_1895 | mreD | Ljam_1895 | Ljam_0968 | Lipoprotein. | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | 0.596 |
Ljam_1895 | rnsT | Ljam_1895 | Ljam_1810 | Lipoprotein. | Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.432 |
Ljam_1966 | Ljam_0105 | Ljam_1966 | Ljam_0105 | Hypothetical protein; Belongs to the UPF0149 family. | Membrane fusogenic activity. | 0.567 |
Ljam_1966 | Ljam_2000 | Ljam_1966 | Ljam_2000 | Hypothetical protein; Belongs to the UPF0149 family. | SCP-2 sterol transfer family protein. | 0.630 |
Ljam_1966 | rnsT | Ljam_1966 | Ljam_1810 | Hypothetical protein; Belongs to the UPF0149 family. | Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.583 |
Ljam_2000 | Ljam_0105 | Ljam_2000 | Ljam_0105 | SCP-2 sterol transfer family protein. | Membrane fusogenic activity. | 0.686 |
Ljam_2000 | Ljam_0638 | Ljam_2000 | Ljam_0638 | SCP-2 sterol transfer family protein. | Membrane protein. | 0.562 |
Ljam_2000 | Ljam_1895 | Ljam_2000 | Ljam_1895 | SCP-2 sterol transfer family protein. | Lipoprotein. | 0.719 |
Ljam_2000 | Ljam_1966 | Ljam_2000 | Ljam_1966 | SCP-2 sterol transfer family protein. | Hypothetical protein; Belongs to the UPF0149 family. | 0.630 |
Ljam_2000 | mreD | Ljam_2000 | Ljam_0968 | SCP-2 sterol transfer family protein. | Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family. | 0.564 |
Ljam_2000 | rnsT | Ljam_2000 | Ljam_1810 | SCP-2 sterol transfer family protein. | Ribonuclease T; Trims short 3' overhangs of a variety of RNA species, leaving a one or two nucleotide 3' overhang. Responsible for the end-turnover of tRNA: specifically removes the terminal AMP residue from uncharged tRNA (tRNA-C-C-A). Also appears to be involved in tRNA biosynthesis. | 0.608 |
Ljam_2000 | tatA | Ljam_2000 | Ljam_1998 | SCP-2 sterol transfer family protein. | TatA protein(twin arginine translocation); Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. TatA could form the protein-conducting channel of the Tat system. | 0.808 |
Ljam_2000 | tatB | Ljam_2000 | Ljam_1997 | SCP-2 sterol transfer family protein. | TatB protein (twin arginine translocation). | 0.808 |
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