Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
Ljam_2025Trehalose-6-phosphate synthase. (1178 aa)    
Predicted Functional Partners:
treF
Alpha,alpha-trehalase.
 
 0.974
Ljam_0503
Polyketide synthase.
   
 0.942
Ljam_1060
Polyketide synthase.
   
 0.942
Ljam_1703
Serine protein kinase.
   
    0.918
galU
Glucose-1-phosphate uridylyltransferase.
    
 0.908
osmC
Peroxiredoxin OsmC.
   
    0.869
Ljam_2679
D-xylose reductase III.
   
 
 0.864
Ljam_1149
Peptide synthetase, non-ribosomal; Belongs to the ATP-dependent AMP-binding enzyme family.
   
 
 0.861
Ljam_1456
Peptide synthetase, non-ribosomal.
   
 
 0.861
Ljam_0726
Glucoamylase.
    
 0.856
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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