STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2078Hypothetical protein. (397 aa)    
Predicted Functional Partners:
Ljam_0907
Rho GTPase (Miro-like).
  
     0.761
smc_3
Chromosome partition protein Smc.
  
     0.748
Ljam_1181
EPTP domain protein.
  
     0.724
Ljam_2209
Ankyrin repeat-containing protein.
  
     0.638
Ljam_1602
Gamma-glutamyltranspeptidase.
  
 
  0.615
Ljam_2499
Conserved protein of unknown function [ankyrin repeat].
  
     0.610
Ljam_2239
Leucine-rich repeat-containing protein (substrate of the Dot/Icm secretion system).
  
     0.604
Ljam_1996
Ankyrin repeats (3 copies).
  
     0.596
Ljam_2515
Serine carboxypeptidase.
  
     0.588
legL1_2
Gala protein type 1, 3 or 4.
  
     0.545
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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