STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
avrBs3Avirulence protein AvrBs3. (497 aa)    
Predicted Functional Partners:
arp_1
Ankyrin repeat protein.
   
  0.696
Ljam_0775
Methyltransferase involved in chemotaxis (CheR domain).
   
 0.618
Ljam_0183
Sensory box histidine kinase/response regulator.
    
 0.615
Ljam_0431
Sensory box histidine kinase/response regulator.
    
 0.615
Ljam_1150
Sensory box histidine kinase/response regulator.
    
 0.615
Ljam_1227
Sensory box histidine kinase/response regulator.
    
 0.615
yjeA
Endo-1,4-beta-xylanase-like protein.
    
  0.593
htpG
Class III heat-shock protein HtpG(molecular chaperone); Molecular chaperone. Has ATPase activity.
   
  0.593
Ljam_0073
GGDEF domain-containing sensory box protein.
   
 0.592
Ljam_1741
Regulatory protein (GGDEF and EAL domains).
   
 0.592
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.