Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
Ljam_2113 | Ljam_2114 | Ljam_2113 | Ljam_2114 | Hypothetical protein. | Oligopeptidase A. | 0.668 |
Ljam_2113 | Ljam_2115 | Ljam_2113 | Ljam_2115 | Hypothetical protein. | Hypothetical protein. | 0.514 |
Ljam_2114 | Ljam_2113 | Ljam_2114 | Ljam_2113 | Oligopeptidase A. | Hypothetical protein. | 0.668 |
Ljam_2114 | Ljam_2115 | Ljam_2114 | Ljam_2115 | Oligopeptidase A. | Hypothetical protein. | 0.647 |
Ljam_2114 | Ljam_2116 | Ljam_2114 | Ljam_2116 | Oligopeptidase A. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.480 |
Ljam_2114 | gap | Ljam_2114 | Ljam_2117 | Oligopeptidase A. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.461 |
Ljam_2114 | pgk | Ljam_2114 | Ljam_2118 | Oligopeptidase A. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.434 |
Ljam_2114 | pykA | Ljam_2114 | Ljam_2119 | Oligopeptidase A. | Pyruvate kinase II; Belongs to the pyruvate kinase family. | 0.421 |
Ljam_2115 | Ljam_2113 | Ljam_2115 | Ljam_2113 | Hypothetical protein. | Hypothetical protein. | 0.514 |
Ljam_2115 | Ljam_2114 | Ljam_2115 | Ljam_2114 | Hypothetical protein. | Oligopeptidase A. | 0.647 |
Ljam_2115 | Ljam_2116 | Ljam_2115 | Ljam_2116 | Hypothetical protein. | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | 0.566 |
Ljam_2115 | gap | Ljam_2115 | Ljam_2117 | Hypothetical protein. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.494 |
Ljam_2115 | pgk | Ljam_2115 | Ljam_2118 | Hypothetical protein. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.487 |
Ljam_2115 | pykA | Ljam_2115 | Ljam_2119 | Hypothetical protein. | Pyruvate kinase II; Belongs to the pyruvate kinase family. | 0.487 |
Ljam_2116 | Ljam_2114 | Ljam_2116 | Ljam_2114 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | Oligopeptidase A. | 0.480 |
Ljam_2116 | Ljam_2115 | Ljam_2116 | Ljam_2115 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | Hypothetical protein. | 0.566 |
Ljam_2116 | gap | Ljam_2116 | Ljam_2117 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | 0.953 |
Ljam_2116 | pgk | Ljam_2116 | Ljam_2118 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family. | 0.960 |
Ljam_2116 | pykA | Ljam_2116 | Ljam_2119 | Transketolase; Catalyzes the transfer of a two-carbon ketol group from a ketose donor to an aldose acceptor, via a covalent intermediate with the cofactor thiamine pyrophosphate. | Pyruvate kinase II; Belongs to the pyruvate kinase family. | 0.946 |
gap | Ljam_2114 | Ljam_2117 | Ljam_2114 | Glyceraldehyde 3-phosphate dehydrogenase; Belongs to the glyceraldehyde-3-phosphate dehydrogenase family. | Oligopeptidase A. | 0.461 |
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