Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2139CBS domain protein. (149 aa)    
Predicted Functional Partners:
Ljam_2140
Sigma 54 modulation protein YhbH.
 
    0.867
Ljam_2205
CBS domain protein.
 
  
  0.796
guaA
GMP synthase; Catalyzes the synthesis of GMP from XMP.
    
 0.676
korA
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
    
  0.620
Ljam_2138
Amino acid transporter.
       0.486
Ljam_1547
2-oxoisovalerate dehydrogenase, E1 component, alpha and beta fusion.
     
  0.440
nadB
L-aspartate oxidase; Catalyzes the oxidation of L-aspartate to iminoaspartate.
  
 
  0.402
Ljam_0073
GGDEF domain-containing sensory box protein.
    
 0.401
Ljam_1741
Regulatory protein (GGDEF and EAL domains).
    
 0.401
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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