STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Ljam_2230Aromatic compounds catabolism. (156 aa)    
Predicted Functional Partners:
Ljam_2231
Osmotically inducible protein Y.
       0.782
Ljam_2229
Hypothetical protein.
 
     0.731
Ljam_0503
Polyketide synthase.
  
  
 0.552
Ljam_1060
Polyketide synthase.
  
  
 0.552
yfcX
Enoyl CoA hydratase; Belongs to the enoyl-CoA hydratase/isomerase family.
 
 0.529
Ljam_1124
Coiled-coil protein.
  
     0.508
Ljam_0055
Hypothetical protein.
  
    0.475
Ljam_2232
Hypothetical protein.
       0.475
Ljam_1838
Hypothetical protein.
  
     0.468
Ljam_0042
Hypothetical protein.
  
 
 0.463
Your Current Organism:
Legionella jamestowniensis
NCBI taxonomy Id: 455
Other names: ATCC 35298, CCUG 29669, CIP 103845, DSM 19215, JCM 7590, L. jamestowniensis, Legionella jamestownensis, NCTC 11981, strain JA-26-G1-E2
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.